Yayınlar
2024
Bicer, M. Exploring therapeutic avenues: mesenchymal stem/stromal cells and exosomes in confronting enigmatic biofilm-producing fungi. Archives of Microbiology, 206(1), 11. (2024)
2023
Yuruk, A., Isoglu, S. D., & Isoglu, I. A. Preparation and Characterization of Viburnum Opulus Containing Electrospun Membranes as Antibacterial Wound Dressing. Fibers and Polymers, 24(11), 3761-3774. (2023)
Bayram, N. N., Ulu, G. T., Abdulhadi, N. A., Gürdap, S., İşoğlu, İ. A., Baran, Y., & İşoğlu, S. D. HER2-Specific Peptide (LTVSPWY) and Antibody (Herceptin) Targeted Core Cross-Linked Micelles for Breast Cancer: A Comparative Study. Pharmaceutics, 15(3), 733. (2023)
ÖZTEL, O. N., YILMAZ, H., İŞOĞLU, İ. A., & ALLAHVERDİYEV, A. Investigation of the Interaction of Adipose-Derived Mesenchymal Stem Cells with ε-Polycaprolactone and Egg White Scaffolds. Gazi University Journal of Science, 1-1. (2023)
Turan, M. G., Orhan, M. E., Cevik, S., & Kaplan, O. I. (2023). CiliaMiner: an integrated database for Ciliopathy Genes and Ciliopathies. Database, baad047. (2023)
Cevik, S., Peng, X., Beyer, T., Pir, M. S., Yenisert, F., Woerz, F., ... & Kaplan, O. I. WDR31 displays functional redundancy with GTPase-activating proteins (GAPs) ELMOD and RP2 in regulating IFT complex and recruiting the BBSome to cilium. Life Science Alliance, 6(8). (2023)
Cevik, S., Zhao, P., Zorluer, A., Pir, M. S., Bian, W., & Kaplan, O. I. Matching variants for functional characterization of genetic variants. G3: Genes, Genomes, Genetics, 13(12), jkad227. (2023)
KAPLAN, O. İ. RPI-1 (human DCDC2) displays functional redundancy with Nephronophthisis 4 in regulating cilia biogenesis in C. elegans. Turkish Journal of Biology, 47(1), 74-83. (2023)
Zeng, J.,* Zhan, J., Qiao, X., Fidan, O. Editorial: Microbial production of medicinally important agents. Frontiers in Microbiology, 14, 1274087. (2023)
Bicer, M.,* Fidan, O. Can mesenchymal stem/stromal cells and their secretomes combat bacterial persisters? World Journal of Microbiology and Biotechnology, 39 (10), 1-11. (2023)
Srivastava, K., Cao, M., Fidan, O., Shi, Y., Yang, N., Wang, J., Wegrzyn, A. N., Miao, M., Zhan, J., Sampson, H.A., Li, X-M. Berberine-containing Natural-medicine with Boiled Peanut-OIT Induces Sustained Peanut tolerance Associated with Distinct Microbiota Signature. Frontiers in Immunology, 14, 1174907. (2023)
Yang, N., Maskey, A.R., Srivastava, K., Kim, M., Wang, Z., Musa, I., Shi, Y., Gong, Y., Fidan, O., Wang, J., Dunkin, D., Chung, D., Zhan, J., Miao, M., Sampson, H.A., Li, X-M. Inhibition of pathologic Immunoglobulin E in food allergy by EBF-2 and active compound berberine associated with immunometabolism regulation. Frontiers in Immunology, 14, 1-13. (2023)
Fidan, O.,* Mujwar, S., Kciuk, M. Discovery of adapalene and dihydrotachysterol as antiviral agents for the Omicron variant of SARS-CoV-2 through computational drug repurposing. Molecular Diversity, 27 (1), 463-475. (2023)
Erol, I., Kotil, S., Fidan, O., Yetiman, A., Durdagi, S., Ortakci, F., In silico analysis of bacteriocins from lactic acid bacteria against SARS-CoV-2. Probiotic and Antimicrobial Peptides, 15 (1), 17-29. (2023)
Orhan, M. E., Demirci, Y. M., & Demirci, M. D. S. NeRNA: A negative data generation framework for machine learning applications of noncoding RNAs. Computers in Biology and Medicine, 159, 106861. (2023)
Bicer, M. Exploring the Potential Therapeutic Approaches of Mesenchymal Stem/Stromal Cells (MSCs) in the Treatment of Vaginal Candidiasis. Current Researches in Health Sciences-II, 1. (2023)
Biçer Çalişkan, M. Exploring Innovative Approaches for Tissue Engineering and Regenerative Medicine. (Chp7). Kaygusuz, K. (ed) Interdisciplinary Studies on Contemporary Research Practices in Engineering in the 21st Century-IV. Ozgur Publications. (2023)
Unlu Yazici, M., Marron, J. S., Bakir-Gungor, B., Zou, F., & Yousef, M. Invention of 3Mint for feature grouping and scoring in multi-omics. Frontiers in Genetics, 14, 1093326. (2023)
Unlu Yazici, M., Bakir-Gungor, B., & Yousef, M. Integrative Analyses in Omics Data: Machine Learning Perspective. GMS Medizinische Informatik, Biometrie und Epidemiologie (2023)
2022
Gurdap, S., Bayram, N. N., Isoglu, I. A., & Dinçer İşoğlu, S. Sulfobetaine-Based Homo-and Copolymers by RAFT: Cross-Linked Micelles and Aqueous Solution Properties. ACS Applied Polymer Materials, 4(9), 6303-6311. (2022)
Bayram, N. N., Ulu, G. T., Topuzoğulları, M., Baran, Y., & Dinçer İşoğlu, S. HER2‐Targeted, Degradable Core Cross‐Linked Micelles for Specific and Dual pH‐Sensitive DOX Release. Macromolecular Bioscience, 22(1), 2100375. (2022)
Bayram, N. N., Topuzoğulları, M., İşoğlu, İ. A., & Dinçer İşoğlu, S. RAFT-synthesized POEGMA-b-P4VP block copolymers: preparation of nanosized micelles for anticancer drug release. Polymer Bulletin, 1-14. (2022)
Yenigül, M., Akçok, İ., & Gencer Akçok, E. B. Ethacrynic acid and cinnamic acid combination exhibits selective anticancer effects on K562 chronic myeloid leukemia cells. Molecular Biology Reports, 49(8), 7521-7530. (2022)
Mujwar, S., Sun, L., & Fidan, O. In silico evaluation of food‐derived carotenoids against SARS‐CoV‐2 drug targets: Crocin is a promising dietary supplement candidate for COVID‐19. Journal of Food Biochemistry, 46(9), e14219. (2022)
Fidan, O., Ren, J., & Zhan, J. Engineered production of bioactive natural products from medicinal plants. World Journal of Traditional Chinese Medicine, 8(1), 59-76. (2022)
Turan, M. G., Kantarci, H., Temtek, S. D., Cakici, O., Cevik, S., & Kaplan, O. I. Protocol for determining the average speed and frequency of kinesin and dynein-driven intraflagellar transport (IFT) in C. áelegans. STAR protocols, 3(3), 101498. (2022).
Pir, M. S., Cevik, S., & Kaplan, O. I. ConVarT: Search Engine for Missense Variants Between Humans and Other Organisms. Current Protocols, 2(11), e619. (2022)
Pir, M. S., Bilgin, H. I., Sayici, A., Coşkun, F., Torun, F. M., Zhao, P., ... & Kaplan, O. I. ConVarT: a search engine for matching human genetic variants with variants from non-human species. Nucleic acids research, 50(D1), D1172-D1178. (2022)
Saçar Demirci, M. D. Computational detection of pre-microRNAs. miRNomics: MicroRNA Biology and Computational Analysis, 167-174 (2022).
GÜNGÖR, B., YAZICI, M. Ü., GÖY, G., & Temiz, M. Enlightening the molecular mechanisms of Type 2 Diabetes with a novel pathway clustering and pathway subnetwork approach. Turkish Journal of Biology, 46(4), 318-341. (2022)
2021
Gürdap, S., Bayram, N. N., İşoğlu, I. A., & Dinçer İşoğlu, S.. Sulfobetaine-Based Homo-and Copolymers by RAFT: Cross-Linked Micelles and Aqueous Solution Properties. ACS Applied Polymer Materials, 4(9), 6303-6311. (2022)
2020
Akşit, N. N., Gürdap, S., İşoğlu, S. D., & İşoğlu, İ. A. Preparation of antibacterial electrospun poly (D, L-lactide-co-glycolide)/gelatin blend membranes containing Hypericum capitatum var. capitatum. International Journal of Polymeric Materials and Polymeric Biomaterials 1-13 (2020).
İşoğlu, İ.A., Koç, N. Centella Asiatica Extract Containing Bilayered Electrospun Wound Dressing. Fibers and Polymers 22 (2020).
Srivastava, K., Fidan, O., Shi, YM., Tang, N., Liu, C., Song, Y., Nowak-Wegryzn, A., Haque, N., Zhan, J. & Li, X-M. Berberine-containing Natural Medicine Confers Sustained Peanut Tolerance Associated with Distinct Microbiota Signature. Journal of Allergy and Clinical Immunology 145, AB84 (2020).
Asif, M., Zora, S., Ceylan, Y., Rehman, R., & Ozturk, L.. Nitrogen supply in combination of nitrate and ammonium enhances harnessing of elevated atmospheric CO2 through improved nitrogen and carbon metabolism in wheat (Triticum aestivum). Crop and Pasture Science, 71(2), 101-112. (2020)
Tarhan, S. Z., Koçer, A. T., Özçimen, D., & Gökalp, İ. Utilization of hydrothermal process water for microalgae growth. Eurasian Journal of Biological and Chemical Sciences, 3(1), 42-47. (2020)
Uslu F, Icoz K, Tasdemir K, Doğan R.S, Yilmaz B. Image-analysis based readout method for biochip: Automated quantification of immunomagnetic beads, micropads and patient leukemia cell. Micron. (2020)
Gökçe B., Akçok İ., Çağır A., Peşen-Okvur D.. A new drug testing platform based on 3D tri-culture in lab-on-a-chip devices. European Journal of Pharmaceutical Sciences, 155, 105542. (2020)
2019
Delman M, Avcı ST, Akçok İ, Kanbur T, Erdal E, Çağır A., Antiproliferative activity of (R)-4’-methyllavuzon on heptacellular carcinoma cells and EpCAM+/CD133+ cancer stem cells via SIRT1 and Exportin-1 (CRM1) inhibition. European Journal of Medicinal Chemistry, 180, 224-237 (2019).
Yürük, A., İşoğlu İ.A. 3-Sulfopropyl methacrylate based cryogens as potential tissue engineering scaffolds. Materials Technology, 1-10 (2019).
Bal, B., Tugluca, I. B., Koc, N., & Isoglu, I. A. On the detailed mechanical response investigation of PHBV/PCL and PHBV/PLGA electrospun mats. Materials Research Express 6(6) 065411 (2019).
İşoğlu, İ. A., Bölgen, N., Korkusuz, P., Vargel, İ., Çelik, H. H., Kılıç, E., ... & Pişkin, E. Stem cells combined 3D electrospun nanofibrous and macrochannelled matrices: a preliminary approach in repair of rat cranial bones. Artificial cells, nanomedicine, and biotechnology 47(1), 1094-1100 (2019).
Kadayifci, M. S., Gokkaya, D., Topuzogullari, M., Isoglu, S. D., Atabey, T., Arasoglu, T., & Ozmen, M. M. Core‐crosslinking as a pathway to develop inherently antibacterial polymeric micelles. Journal of Applied Polymer Science, 48393 (2019).
Kaplan OI, Torun FM, Guner H, Cevik S, Conserved clinical variation visualization tool (ConVarT), The European Journal of Human Genetics, 27, 1697-1698 (2019)
Fidan, O., Yan, R., Zhu, D. & Zhan, J. Improved production of antifungal angucycline Sch47554 by manipulating three regulatory genes in Streptomyces sp. SCC‐2136. Biotechnology and applied biochemistry 66, 517-526 (2019).
Fidan, O. & Zhan, J. Discovery and engineering of an endophytic Pseudomonas strain from Taxus chinensis for efficient production of zeaxanthin diglucoside. Journal of biological engineering 13, 66 (2019).
Yuan, H., Wang, H., Fidan, O., Qin, Y., Xiao, G. & Zhan, J. Identification of new glutamate decarboxylases from Streptomyces for efficient production of γ-aminobutyric acid in engineered Escherichia coli. Journal of Biological Engineering 13, 24 (2019).
2018
İşoğlu İ.A., Demirkan C., Şeker M.G., Tuzlakoğlu K., and Dinçer İşoğlu S. An Antimicrobial Bilayered Skin Patches Made of HPMA and Quaternary Poly(4-vinyl pyridine), Fibers and Polymers,19(11), 2229-2236 (2018).
Fidan, O., Yan, R., Gladstone, G., Zhou, T., Zhu, D. & Zhan, J. New insights into the glycosylation steps in the biosynthesis of Sch47554 and Sch47555. ChemBioChem 19, 1424-1432 (2018).
Fidan, O. & Zhan, J. Reconstitution of medicinally important plant natural products in microorganisms. Molecular Pharming: Applications, Challenges, and Emerging Areas: John Wiley & Sons, Inc, 383-415 (2018).
Gopakumar, A., Akçok, İ., Lombardo, L., Le Formal, F., Magrez, A., Sivula, K. and Dyson, P. J. Iron-Rich Natural Mineral Gibeon Meteorite Catalyzed N-formylation of Amines using CO2 as the C1 Source. ChemistrySelect, 3, 10271-10276 (2018).
2017
Çağır, A., Odacı, B., Varol, M., Akçok, İ., Okur, Ö., Koparal, A. T. Evaluation of Multifunctional Hybrid Analogs for Stilbenes, Chalcones and Flavanones. Anticancer Agents Med Chem, 17(14), 1915-1923 (2017).
Kanbur, T., Kara, M., Kutluer, M., Şen, A., Delman, M., Alkan, A., Otaş, H. O., Akçok, İ., Çağır, A. CRM1 inhibitory and antiproliferative activities of novel 4'-alkyl substituted klavuzon derivatives. Bioorganic and Medicinal Chemistry, 25(16), 4444-4451 (2017).
Akçok, İ., Mete, D. Şen, A., Kasaplar, P., Korkmaz, K. S., Çağır, A. Synthesis and Topoisomerase I inhibitory properties of klavuzon derivatives. Bioorganic Chemistry, 71, 275-284 (2017).
Allahverdiyev A., Koç R.Ç., Bağırova M., Elçiçek, S., Baydar S.Y., Öztel O.N., Abamor E.Ş., Ateş S.C., Topuzoğulları M., İşoğlu S., Akdeste Z. A new approach for development of vaccine against visceral leishmaniasis: Lipophosphoglycan and polyacrylic acid conjugates, Asian Pacific Journal of Tropical Medicine, 10(9), 877–886 (2017).
Culumber, M., McMahon, D. J., Ortakci, F., Montierth, L., Villalba, B., Broadbent, J. R. & Oberg, C. J. Hot topic: Geographical distribution and strain diversity of Lactobacillus wasatchensis isolated from cheese with unwanted gas formation. J Dairy Sci. 100(11): 8764-8767 (2017).
2016
Karakulina, A., Gopakumar, A., Akçok, İ., Roulier, B.L., LaGrange, T., Katsyuba, S. A., Das, S.* and Dyson, P. J.*. A Rhodium Nanoparticle-Lewis Acidic Ionic Liquid Catalyst for the Chemoselective Reduction of Heteroarenes. Angew Chem Int Ed, 55, 292-296 (2016).
Topuzoğulları M., Basaran Elalmıs Y., İşoğlu S. Thermo-Responsive Complexes of c-Myc Antisense Oligonucleotide with Block Copolymer of Poly(OEGMA) and Quaternized Poly(4-Vinylpyridine). Macromolecular Bioscience 17(4), 1600263 (2016).
Salimi K., Topuzoğulları M., Dinçer S., Aydın H.M., Pişkin E. Microwave-asisted green approach for graft copolymerization of L-lactic acid onto starch, Journal of Applied Polymer Science, 133(6) (2016).
İşoğlu İ.A., Özsoy Y., İşoğlu S. Advances in micelle-based drug delivery: Cross-linked systems, Current Topics in Medicinal Chemistry, 17(13), 1469-1489. (2016).
Oberg, C. J., Culumber, M. D., Oberg, T. S., Ortakci, F., Broadbent, J. R. & McMahon, D. J. Lactobacillus wasatchensis sp. nov., a non-starter lactic acid bacteria isolated from aged Cheddar cheese. International Journal of Systematic and Evolutionary Microbiology. 10/2015, (2016).
2015
Akçok, İ & Çağır, A. One-Pot Vinylogous Aldol Addition of β,γ-Unsaturated Esters Under Mild Conditions. New J. Chem.39, 5121-5123 (2015).
Kahraman E., Karagöz A., İşoğlu S., Özsoy Y. Polyethylenimine modified and non-modified polymeric micelles used for nasal administration of carvedilol (or medication), Journal of Biomedical Nanotechnology 11, 890-899 (2015).
Ortakci, F., Broadbent, J. R., Oberg, C. J. & McMahon, D. J. Late blowing of Cheddar cheese induced by accelerated ripening and ribose and galactose supplementation in presence of a novel obligatory heterofermentative nonstarter Lactobacillus wasatchensis. J Dairy Sci. 98(11): 7460-72 (2015).
Ortakci, F., Broadbent, J. R., Oberg, C. J. & McMahon, D. J. Growth and gas formation by Lactobacillus wasatchensis a novel obligatory heterofermentative nonstarter lactic acid bacterium in Cheddar-style cheese made using a Streptococcus thermophilus starter. J Dairy Sci. 98(11): 7473-82 (2015).
Ortakci, F., Broadbent, J. R., Oberg, C. J. & McMahon, D. J. Growth and gas production of a novel obligatory heterofermentative cheddar cheese nonstarter lactobacilli species on ribose and galactose. J. Dairy Sci. 98(6): 3645-3654 (2015).
Fidan, O. & Zhan, J. Recent advances in engineering yeast for pharmaceutical protein production. RSC Advances 5, 86665-86674 (2015).
2014
Topuzoğulları M., Bulmuş Zareie E.V., Dalgakıran E., Dinçer S. pH- and temperature-responsive amphiphilic diblock copolymers of 4-vinylpyridine and oligoethyleneglycol methacrylate synthesized by RAFT polymerization, Polymer, 55(2): 525-534 (2014).
2013
Uzunalan, G., Ozturk, M. T., Dincer, S., & Tuzlakoglu, K. A newly designed collagen-based bilayered scaffold for skin tissue regeneration. J Compos Biodegrad Polym, 1, 8-15 (2013).
Özdemir, Z., Topuzoğulları, M., İşoğlu, İ. A., & Dinçer, S. RAFT-mediated synthesis of poly (N-(2-hydroxypropyl) methacrylamide-b-4-vinylpyridine) by conventional and microwave heating.Polymer bulletin, 70(10), 2857-2872 (2013).
Topuzogullari, M., Koc, R. C., Isoglu, S. D., Bagirova, M., Akdeste, Z., Elcicek, S., ... & Yesilkir Baydar, S. Canim Ates S, Allahverdiyev AM. Conjugation, characterization and toxicity of lipophosphoglycan-polyacrylic acid conjugate for vaccination against leishmaniasis. J Biomed Sci, 20, 1-8 (2013).
Ertugay, F., Baslar, M. & Ortakci, F. Effect of Pulsed Electric Field (PEF) treatment on polyphenol oxidase, total phenolic compounds and microbial growth of apple juice. Tur J. Agric and For. Vol. 37: 772-780 (2013).
2012
Cetinel, S., Dincer, S., Cebeci, A., Oren, E. E., Whitaker, J. D., Schwartz, D. T., ... & Tamerler, C. Peptides to bridge biological-platinum materials interface. Bioinspired, Biomimetic and Nanobiomaterials, 1(3), 143-153 (2012).
Ortakci, F. Broadbent, J. R., McManus, W. R. & McMahon, D. J. Survival of Microencapsulated Probiotic Lactobacillus paracasei LBC-1e during manufacture of Mozzarella cheese and simulated gastric digestion. J. Dairy Sci. 95(11): 6274-6281 (2012).
Ortakci, F. & Sert, S. Stability of free and encapsulated Lactobacillus acidophilus ATCC 4356 in yogurt and in an artificial human gastric digestion system. J. Dairy Sci. 95(12): 6918-6925 (2012).
2011
Dinçer, S., Türk, M., Karagöz, A., & Uzunalan, G. Potential c-myc antisense oligonucleotide carriers: PCl/PEG/PEI and PLL/PEG/PEI. Artificial Cells, Blood Substitutes, and Biotechnology, 39(3), 143-154 (2011).
2010
Akçok, İ & Çağır, A. Synthesis of Stilbene-Fused 2’-Hydroxychalcone and Flavanone Libraries. Bioorganic Chemistry, 38, 139-143 (2010).
Karagöz, A., Dincer, S., Microwave‐Assisted Synthesis of Poly (ε‐caprolactone)‐block‐poly (ethylene glycol) and Poly (lactide)‐block‐poly (ethylene glycol). In: Macromolecular symposia. Weinheim: WILEY‐VCH Verlag, 295(1), 131-137 (2010).
Dincer, S., Oskay, E. K., Piskin, A. K., Zeybek, N. D., & Piskin, E. Growth inhibition of SK‐MEL‐30 human melanoma cells by antisense c‐myc oligonucleotides delivered by poly (N‐isopropylacrylamide)/poly (ethyleneimine) copolymer. Journal of tissue engineering and regenerative medicine, 4(4), 284-290 (2010).
Ortakci, F., Gurses, M. & Sert, S. Microbiological Quality of Turkish Safranbolu Delight. Journal of Agricultural Faculty of Ataturk University, 41: (2), 145-147 (2010).
2009
Pişkin, E., İşoğlu, İ. A., Bölgen, N., Vargel, I., Griffiths, S., Çavuşoğlu, T., ... & Cartmell, S. In vivo performance of simvastatin‐loaded electrospun spiral‐wound polycaprolactone scaffolds in reconstruction of cranial bone defects in the rat model. Journal of Biomedical Materials Research Part A, 90(4), 1137-1151 (2009).
2008
Dincer, S., Tamerler, C., Sarıkaya, M., & Pişkin, E. Photoresponsive peptide–azobenzene conjugates that specifically interact with platinum surfaces. Surface science, 602(10), 1757-1762 (2008).
Isoglu, I. A., Bolgen, N., Vargel, I., Cavusoglu, T., Korkusuz, P., Guzel, E., & Piskin, E. Electrospun spiral-wounded polycaprolactone scaffolds with or without stem cells for cranial bone defects: an animal model. Tissue engineering Part A,14(5), 847 (2008).
2007
Seker, U. O. S., Wilson, B., Dincer, S., Kim, I. W., Oren, E. E., Evans, J. S., ... & Sarikaya, M. Adsorption behavior of linear and cyclic genetically engineered platinum binding peptides. Langmuir, 23(15), 7895-7900 (2007).
Türk, M., Dincer, S., & Pişkin, E. Smart and cationic poly (NIPA)/PEI block copolymers as non‐viral vectors: in vitro and in vivo transfection studies. Journal of tissue engineering and regenerative medicine, 1(5), 377-388. (2007).
Rzaev, Z. M., Dincer, S., & Pişkin, E. Functional copolymers of N-isopropylacrylamide for bioengineering applications. Progress in Polymer Science, 32(5), 534-595. (2007).
Piskin, E., Bölgen, N., Egri, S., & Isoglu, I. A. Electrospun matrices made of poly (α-hydroxy acids) for medical use. Nanomedicine, 2(4), 441-457 (2007).
Piskin, E., Isoglu, A., Bolgen, N., Griffiths, S., Vargel, I., Cavusoglu, T., & Cartmell, S. Simvastatin releasing novel PCL scaffolds in rat cranium defects. Tissue Engineering, 13(7), 1756 (2007).
Aksu, Z., & Isoglu, I. A. Use of dried sugar beet pulp for binary biosorption of Gemazol Turquoise Blue-G reactive dye and copper (II) ions: equilibrium modeling. Chemical Engineering Journal, 127(1-3), 177-188 (2007).
2006
Dincer, S., Rzaev, Z. M., & Piskin, E. Synthesis and characterization of stimuli-responsive poly (N-isopropylacrylamide-co-N-vinyl-2-pyrrolidone). Journal of Polymer Research, 13(2), 121-131. (2006).
Aksu, Z., & Isoglu, I. A. Use of agricultural waste sugar beet pulp for the removal of Gemazol turquoise blue-G reactive dye from aqueous solution. Journal of hazardous materials, 137(1), 418-430 (2006)
2005
Dincer, S., Türk, M., & Pişkin, E. Intelligent polymers as nonviral vectors. Gene therapy, 12(1), 139-145. (2005).
Aksu, Z., & İşoğlu, İ. A. Removal of copper (II) ions from aqueous solution by biosorption onto agricultural waste sugar beet pulp. Process Biochemistry, 40(9), 3031-3044 (2005).
2004
Türk, M., Dinçer, S., Yuluğ, I. G., & Pişkin, E. In vitro transfection of HeLa cells with temperature sensitive polycationic copolymers. Journal of controlled release, 96(2), 325-340 (2004).
Pişkin, E., Dincer, S., & Türk, M. Gene delivery: intelligent but just at the beginning. Journal of Biomaterials Science, Polymer Edition, 15(9), 1181-1202 (2004).
2003
Tamerler, C., Dincer, S., Heidel, D., Zareie, M. H., & Sarikaya, M. Biomimetic multifunctional molecular coatings using engineered proteins. Progress in Organic Coatings, 47(3-4), 267-274 (2003).
Tamerler, C., Dinçer, S., Heidel, D., Karaguler, N., & Sarikaya, M. Combinatorial Peptide Libraries for Selecting Inorganic-Binding Proteins: A Step in Molecular Biomimetics. MRS Online Proceedings Libr, 773 (2003).
David, G., Alupei, V., Simionescu, B. C., Dinçer, S., & Piskin, E. Poly (N-isopropylacrylamide)/poly [(N-acetylimino) ethylene] thermosensitive block and graft copolymers. European polymer journal, 39(6), 1209-1213 (2003).
Kesim, H., Rzaev, Z. M., Dinçer, S., & Pişkin, E. Functional bioengineering copolymers. II. Synthesis and characterization of amphiphilic poly (N-isopropyl acrylamide-co-maleic anhydride) and its macrobranched derivatives. Polymer, 44(10), 2897-2909 (2003).
2002
Dinçer, S., Köseli, V., Kesim, H., Rzaev, Z. M., & Pişkin, E. Radical copolymerization of N-isopropylacrylamide with anhydrides of maleic and citraconic acids. European polymer journal, 38(11), 2143-2152 (2002).
Sözlü Sunumlar
2020-2012
Kaplan OI, Caenorhabditis elegans as a model to understand the molecular basis of rare diseases, 1.Uluslar Arası Katılımlı Dermatogenetik Sempozyumu (2020)
Yenisert F, Kaplan OI, Functional inference of human genetic variants from non-human organisms, 1.Uluslar Arası Katılımlı Dermatogenetik Sempozyumu (2020)
Tarhan S.Z., Kocer A.T., Gokalp I., Ozcımen D., “Utilization of hydrothermal process water for microalgae growth”, 3rd International Eurasian Conference on Biological and Chemical Sciences (EurasianBioChem 2020), Ankara, Turkey, 19-20 March 2020
Asif, M., Zora, S., & Öztürk, L.Interactive effect of elevated carbon dioxide and nitrogen sources on wheat plants. Innovations in agriculture: Nourishing Pakistan in Changing Climate (2019)
Ortakci, F. A novel gas forming lactic acid bacterium in cheese. UW- Madison Food Science Department, October 5, Madison, WI. Invited Talk (2019).
R. S. Doğan and B. Yilmaz, "Polyp Localization in Colonoscopy Images Using Vessel Density," 2018 Medical Technologies National Congress (TIPTEKNO), Magusa, (2018)
P. Kilinç, R. S. Doğan, M. Altinkaynak and A. Güven, "Assessment of attention before and after exam with reaction time," 2017 Medical Technologies National Congress (TIPTEKNO), Trabzon, (2017)
Ortakci, F., Broadbent, J. R., Oberg, C. J. & McMahon, D. J. Late blowing of Cheddar cheese induced by accelerated ripening and ribose and galactose supplementation in presence of a novel obligatory heterofermentative nonstarter lactobacilli species. ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Orlando, FL (2015).
Ortakci, F. Broadbent, J. R., McManus, W. R. & McMahon, D. J. Growth and gas formation by a novel obligatory heterofermentative nonstarter lactobacilli species in Cheddar cheese manufactured using S. thermophilus starter. ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Orlando, FL (2015).
Ortakci, F. Gas Forming Bacteria in Cheese. Global Cheese Technology Forum. Reno, NV. Invited Speaker (2013).
Ortakci, F. Broadbent, J. R., McManus, W. R. & McMahon, D. J. 2012. Survival of microencapsulated probiotic Lactobacillus paracasei LBC-1e during manufacture of mozzarella cheese and simulated gastric digestion. ADSA- AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, July 15-19, Phoenix, AZ (2012).
Poster Sunumları
Culumber, M., Oberg, T., Allen, T., Ortakci, F., Oberg, C. & McMahon, D. J. Selective primer development for rapid detection of the gas-producing non-starter bacterium Lactobacillus wasatchensis. ADSA Annual Meeting, June 25-28 Pittsburg, PA (2017).
Montierth, L., Oberg, C., Culumber, M., McMahon, D. J., Ortakci, F. & Broadbent, J. R. Lactobacillus wasatchii WDC04 associated with late gas production in aged Cheddar cheese. ADSA-AMPA-ASAS- CSAS-WSASAS Joint Annual Meeting, Orlando, FL (2015).
Broadbent, J. R., Oberg, C. J., Culumber, M. D., Oberg, T. S., Ortakci, F. & McMahon, D. J. Characterization of Lactobacillus wasatchii WDC04, a novel species associated with late gas production in cheddar cheese. 11th International Symposium on Lactic Acid Bacteria. Netherlands. (August 31-September 4, 2014).
Ortakci, F., Broadbent, J. R., Oberg, C. J. & McMahon, D. J. The salt, pH, and thermotolerance of a novel nonstarter lactic acid bacterium that might be associated with slit defect in ripened Cheddar cheese. ADSA-AMPA-ASAS- CSAS-WSASAS Joint Annual Meeting, Kansas City, Missouri, July 20-24 (2013).
Oberg, C. J., Culumber, M. D., Oberg, T. S., Ortakci, F., Broadbent, J. R. & McMahon, D. J. Genomic Analysis of Lactobacillus WDC04, A Novel Species associated with late gas production in cheese. ADSA-AMPA-ASAS-CSAS- WSASAS Joint Annual Meeting, July 8-12, Indianapolis, IN (2013).
Ortakci, F., Broadbent, J. R., Oberg, C. J., Oberg, T. S. & McMahon, D. J. Gas formation and growth characteristics of an oligotrophic lactobacillus species isolated from cheddar cheese. ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, July 8-12, Indianapolis, IN (2013).
Ortakci, F. & Sert, S. Viability of free and encapsulated Lactobacillus acidophilus ATCC 4356 in Yogurt and Artificial Human Gastric Digestion System. ADSA-AMPA-ASAS-CSAS-WSASAS Joint Annual Meeting, Phoenix, AZ. (July 15-19, 2012).
Ortakci, F. & Sert, S. Main components used for microencapsulation of probiotics.1st International Congress on Food Technology. Belek/Antalya. (November 3-6, 2010)
Yildiz, H., Kavaz, A., Ortakci, F. & Sert, S. A Traditional Food Product: Tarhana. Traditional Foods from Adriatic to Caucasus. Tekirdag (April 15-17, 2010).
Ortakci, F., Cetin, B. & Sert, S. The use of microencapsulated probiotic bacteria in several foods. 6th Food Engineering Congress. Antalya (2009).